Changelog¶
All notable changes to this project will be documented in this file or page
v0.32¶
Apr 10, 2020
Added:
Intrinsic inter-axonal and mean extra-axonal diffusivity calculation to WMTI
Changed:
Method
json2fslgradconverted from class method to function definitionDocumentation update
Removed:
None
v0.31¶
Apr 9, 2020
Added:
NaN check in AWF calculculation that prevents further errors in intra-axonal and extra-axonal WMTI metrics computation
Changed:
designer.fitting.dwipyinput file detection methodDockerfile_releasenow deletes the correct temporary file to prevent build error
Removed:
None
v0.3¶
Apr 8, 2020
Added:
Head motion plot from on eddy_qc outputs
Outlier plot from IRRLS outlier detection
Updated documentation
Option to reslice DWI with
--reslice [x,y,z]
Changed:
Flag
--epiboost [index]changed to--epi [n], where users can specify the number of reverse phase encoded B0 pairs to use in EPI correction. Non-indexed B0s were previously destructively removed from DWI, leading to incorrect weighing of B0s in tensor estimation. The new method now preserves all B0s, thereby allowing faster EPI distortion correction without degrading DTI/DKI maps.Documentation moved to ReadTheDocs
Moved B0 production module from designer.preprocessing.brainmask to a separate function at
designer.preprocessing.extractmeanbzero()that gets called by PyDesigner main. This allows a B0.nii to be produced regardless of the--maskflag.
Removed:
Documentation inconsistencies
v0.2 [The Cupid Release]¶
Feb 26, 2020
Added:
Installer for setup with
pip install .Multiple file support: .nii, .nii.gz, .dcm, .mif
reStructuredText styled documentation
Ability to use
--resumeflag for DWI concatenationSNR plot to depict signal changes before and after preprocessing
Full utilization of AVX instruction set on AMD machines
WMTI parameters
Changed:
Fixed topup series not being denoised
Removed:
CSF masking; feature failed to work consistently