Adds utilities for preparing the data for eddy and analysis
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designer.preprocessing.preparation.
fix_bval
(bvalfile)¶ Converts all whitespace into newlines in the file
- Parameters
bvalfile (str) – The .bval to ensure is the correct format for mrtrix
- Returns
- Return type
None, overwrites bval
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designer.preprocessing.preparation.
make_se_epi
(filetable)¶ Makes a single spin-echo epi from the topup and the dwi
- Parameters
filetable (dict of str) – The filetable that pydesigner.py uses to track files
- Returns
- Return type
None, writes file
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designer.preprocessing.preparation.
make_simple_mif
(filetable)¶ Makes a single .mif from the HEAD dwi file
- Parameters
filetable (dict of str) – The filetable that pydesigner.py uses to track files
- Returns
- Return type
None, writes file